PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000051.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 252aa    MW: 26967.1 Da    PI: 8.0062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000051.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000127496123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C + F++   L  H+++H
  Itr_sc000051.1_g00019.1 74 YTCTFCRREFRSAQALGGHMNVH 96
                             9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-671101No hitNo description
SMARTSM003550.00667496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15774101IPR007087Zinc finger, C2H2
PfamPF139121.9E-57497IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAAQLGLFSV SHQLQNLVES QLQPPPPPSA GATTGYWMRN MKNAAAAAED EDSWEIRAFA  60
EDTGNNATWP PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLHHAPPRP SVVPPHFPSP  120
AAAALFPPQE IVANASLCLL YSLPNPNAAA AFSPAAVKPC SVNSSPTLLS ISPFATTHNL  180
PSLNFPATTQ FIAASSLKVP AESSQAASNN NNNYSNNGTR KREAAIEEQL ELDLELRLGR  240
GSSSSSSSSP PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-136996229superman protein
2l1o_A1e-136996229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016554111.16e-70PREDICTED: zinc finger protein JAGGED
TrEMBLB9N2N52e-63B9N2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09000.15e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-26C2H2 family protein